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Livres
Articles (33)
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Preferential attachment renders an evolving network of populations robust against crashes

Areejit Samal, Hildegard Meyer-Ortmanns

Journal:

Physica A: Statistical Mechanics and its Applications

Année:

2009

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2009

Targeting multiple targets in Pseudomonas aeruginosa PAO1 using flux balance analysis of a reconstructed genome-scale metabolic network

Perumal, Deepak, Samal, Areejit, Sakharkar, Kishore R., Sakharkar, Meena K.

Journal:

Journal of Drug Targeting

Année:

2011

Langue:

english

Fichier:

PDF, 764 KB

english, 2011

Forman curvature for complex networks

Sreejith, R P, Mohanraj, Karthikeyan, Jost, Jürgen, Saucan, Emil, Samal, Areejit

Journal:

Journal of Statistical Mechanics Theory and Experiment

Année:

2016

Langue:

english

Fichier:

PDF, 5.53 MB

english, 2016

Systematic evaluation of a new combinatorial curvature for complex networks

Sreejith, R.P., Jost, Jürgen, Saucan, Emil, Samal, Areejit

Journal:

Chaos, Solitons & Fractals

Année:

2017

Langue:

english

Fichier:

PDF, 5.02 MB

english, 2017

Network approach towards understanding the crazing in glassy amorphous polymers

Venkatesan, Sudarkodi, Vivek-Ananth, R P, Sreejith, R P, Mangalapandi, Pattulingam, Hassanali, Ali A, Samal, Areejit

Journal:

Journal of Statistical Mechanics Theory and Experiment

Année:

2018

Langue:

english

Fichier:

PDF, 3.03 MB

english, 2018

Comparative analysis of two discretizations of Ricci curvature for complex networks

Samal, Areejit, Sreejith, R. P., Gu, Jiao, Liu, Shiping, Saucan, Emil, Jost, Jürgen

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 2.98 MB

english, 2018

Challenges in experimental data integration within genome-scale metabolic models

Pierre-Yves Bourguignon, Areejit Samal, François Képès, Jürgen Jost, Olivier C Martin

Journal:

Algorithms for Molecular Biology

Année:

2010

Langue:

english

Fichier:

PDF, 354 KB

english, 2010

Environmental versatility promotes modularity in genome-scale metabolic networks

Areejit Samal, Andreas Wagner, Olivier C Martin

Journal:

BMC Systems Biology

Année:

2011

Langue:

english

Fichier:

PDF, 304 KB

english, 2011

Conservation of high-flux backbone in alternate optimal and near-optimal flux distributions of metabolic networks

Areejit Samal

Journal:

Systems and Synthetic Biology

Année:

2008

Langue:

english

Fichier:

PDF, 417 KB

english, 2008

Learning and structure of neuronal networks

KIRAN M KOLWANKAR, QUANSHENG REN, AREEJIT SAMAL, JÜRGEN JOST

Journal:

Pramana

Année:

2011

Langue:

english

Fichier:

PDF, 260 KB

english, 2011

STDP-driven networks and the C. elegans neuronal network

Quansheng Ren, Kiran M. Kolwankar, Areejit Samal, Jürgen Jost

Journal:

Physica A: Statistical Mechanics and its Applications

Année:

2010

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2010

Low degree metabolites explain essential reactions and enhance modularity in biological networks

Areejit Samal, Shalini Singh, Varun Giri, Sandeep Krishna, Nandula Raghuram, Sanjay Jain

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 325 KB

english, 2006

The regulatory network ofE. colimetabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response

Areejit Samal, Sanjay Jain

Journal:

BMC Systems Biology

Année:

2008

Langue:

english

Fichier:

PDF, 786 KB

english, 2008

Genotype networks in metabolic reaction spaces

Areejit Samal, João F Matias Rodrigues, Jürgen Jost, Olivier C Martin, Andreas Wagner

Journal:

BMC Systems Biology

Année:

2010

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2010

Network function shapes network structure: the case of the Arabidopsis flower organ specification genetic network

Henry, Adrien, Monéger, Françoise, Samal, Areejit, Martin, Olivier C.

Journal:

Molecular BioSystems

Année:

2013

Langue:

english

Fichier:

PDF, 2.21 MB

english, 2013

Hopf bifurcation in the evolution of networks driven by spike-timing-dependent plasticity

Ren, Quansheng, Kolwankar, Kiran M., Samal, Areejit, Jost, Jürgen

Journal:

Physical Review E

Année:

2012

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2012

Flux-based classification of reactions reveals a functional bow-tie organization of complex metabolic networks

Singh, Shalini, Samal, Areejit, Giri, Varun, Krishna, Sandeep, Raghuram, Nandula, Jain, Sanjay

Journal:

Physical Review E

Année:

2013

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2013

Analysis of the hierarchical structure of the B. subtilis transcriptional regulatory network

Kumar, Santhust, Vendruscolo, Michele, Singh, Amit, Kumar, Dhiraj, Samal, Areejit

Journal:

Molecular BioSystems

Année:

2015

Langue:

english

Fichier:

PDF, 2.30 MB

english, 2015

Statistical Physics Methods Provide the Exact Solution to a Long-Standing Problem of Genetics

Samal, Areejit, Martin, Olivier C.

Journal:

Physical Review Letters

Année:

2015

Langue:

english

Fichier:

PDF, 541 KB

english, 2015

Cloning and Targeted Disruption of Two Lipopolysaccharide Biosynthesis Genes, kdsA and waaG, of Pseudomonas aeruginosa PAO1 by Site-Directed Mutagenesis

Perumal, Deepak, Sakharkar, Kishore R., Tang, Thean Hock, Chow, Vincent T.K., Lim, Chu Sing, Samal, Areejit, Sugiura, Norio, Sakharkar, Meena K.

Journal:

Journal of Molecular Microbiology and Biotechnology

Année:

2010

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2010

Relative stability of network states in Boolean network models of gene regulation in development

Zhou, Joseph Xu, Samal, Areejit, d’Hérouël, Aymeric Fouquier, Price, Nathan D., Huang, Sui

Journal:

Biosystems

Année:

2016

Langue:

english

Fichier:

PDF, 1.95 MB

english, 2016

Comparative proteomic analyses of avirulent, virulent and clinical strains of Mycobacterium tuberculosis identifies strain-specific patterns

Jhingan, Gagan Deep, Kumari, Sangeeta, Jamwal, Shilpa V., Kalam, Haroon, Arora, Divya, Jain, Neharika, KrishnaKumaar, Lakshmi, Samal, Areejit, Rao, Kanury V. S., Kumar, Dhiraj, Nandicoori, Vinay Kumar

Journal:

Journal of Biological Chemistry

Année:

2016

Langue:

english

Fichier:

PDF, 3.24 MB

english, 2016

Advances in the integration of transcriptional regulatory information into genome-scale metabolic models

Vivek-Ananth, R.P., Samal, Areejit

Journal:

Biosystems

Année:

2016

Langue:

english

Fichier:

PDF, 2.18 MB

english, 2016

Phenotypic constraints promote latent versatility and carbon efficiency in metabolic networks

Bardoscia, Marco, Marsili, Matteo, Samal, Areejit

Journal:

Physical Review E

Année:

2015

Langue:

english

Fichier:

PDF, 319 KB

english, 2015

Haldane, Waddington and recombinant inbred lines: extension of their work to any number of genes

Samal, Areejit, Martin, Olivier C.

Journal:

Journal of Genetics

Année:

2017

Langue:

english

Fichier:

PDF, 724 KB

english, 2017

IMPPAT: A curated database of Indian Medicinal Plants, Phytochemistry And Therapeutics

Mohanraj, Karthikeyan, Karthikeyan, Bagavathy Shanmugam, Vivek-Ananth, R. P., Chand, R. P. Bharath, Aparna, S. R., Mangalapandi, Pattulingam, Samal, Areejit

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 6.11 MB

english, 2018

Comparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species

Vivek-Ananth, R. P., Mohanraj, Karthikeyan, Vandanashree, Muralidharan, Jhingran, Anupam, Craig, James P., Samal, Areejit

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 3.52 MB

english, 2018

Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

Samal, Areejit, Craig, James P., Coradetti, Samuel T., Benz, J. Philipp, Eddy, James A., Price, Nathan D., Glass, N. Louise

Journal:

Biotechnology for Biofuels

Année:

2017

Langue:

english

Fichier:

PDF, 1.95 MB

english, 2017

A curated knowledgebase on endocrine disrupting chemicals and their biological systems-level perturbations

Karthikeyan, Bagavathy Shanmugam, Ravichandran, Janani, Mohanraj, Karthikeyan, Vivek-Ananth, R.P., Samal, Areejit

Journal:

Science of The Total Environment

Année:

2019

Langue:

english

Fichier:

PDF, 2.98 MB

english, 2019

Persistent homology of unweighted complex networks via discrete Morse theory

Kannan, Harish, Saucan, Emil, Roy, Indrava, Samal, Areejit

Journal:

Scientific Reports

Année:

2019

Langue:

english

Fichier:

PDF, 3.66 MB

english, 2019

In Silico Identification of Potential Natural Product Inhibitors of Human Proteases Key to SARS-CoV-2 Infection

Vivek-Ananth, R.P., Rana, Abhijit, Rajan, Nithin, Biswal, Himansu S., Samal, Areejit

Journal:

Molecules

Année:

2020

Fichier:

PDF, 9.32 MB

2020

Forman-Ricci curvature and persistent homology of unweighted complex networks

Roy, Indrava, Vijayaraghavan, Sudharsan, Ramaia, Sarath Jyotsna, Samal, Areejit

Journal:

Chaos, Solitons & Fractals

Année:

2020

Fichier:

PDF, 1.96 MB

2020

DEDuCT 2.0: An updated knowledgebase and an exploration of the current regulations and guidelines from the perspective of endocrine disrupting chemicals

Karthikeyan, Bagavathy Shanmugam, Ravichandran, Janani, Aparna, S.R., Samal, Areejit

Journal:

Chemosphere

Année:

2020

Fichier:

PDF, 1.37 MB

2020